{"id":611,"date":"2022-11-03T14:20:13","date_gmt":"2022-11-03T19:20:13","guid":{"rendered":"https:\/\/behavioralplasticity.org\/?page_id=611"},"modified":"2023-02-28T18:53:48","modified_gmt":"2023-03-01T00:53:48","slug":"genomic-resources","status":"publish","type":"page","link":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/","title":{"rendered":"Genomic Resources"},"content":{"rendered":"\n<p><\/p>\n\n\n\n<p><strong>1. All six <em>Schistocerca<\/em> genomes have been submitted to NCBI and annotated. These assemblies are available at NCBI:<\/strong><\/p>\n\n\n\n<p>BPRI <em>Schistocerca<\/em> genome BioProject: <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/772722\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/772722<\/a><\/p>\n\n\n\n<p><em>Schistocerca gregaria<\/em> (Desert locust): <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/814718\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/814718<\/a><\/p>\n\n\n\n<p><em>Schistocerca piceifrons<\/em> (Central American locust): <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/109698\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/genome\/109698<\/a><\/p>\n\n\n\n<p><em>Schistocerca cancellata<\/em> (South American locust): <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/114655\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/genome\/114655<\/a><\/p>\n\n\n\n<p><em>Schistocerca americana<\/em> (American bird grasshopper): <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/109697\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/genome\/109697<\/a><\/p>\n\n\n\n<p><em>Schistocerca serialis cubense<\/em> (Cuban bird grasshopper): <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/115782\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/genome\/115782<\/a><\/p>\n\n\n\n<p><em>Schistocerca nitens<\/em> (Gray bird grasshopper) : <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/114651\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.ncbi.nlm.nih.gov\/genome\/114651<\/a><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><strong>2. The genome browsers for all six <em>Schistocerca<\/em> species are available at USDA\u2019s i5k Workspace@NAL:<\/strong><\/p>\n\n\n\n<p><em>Schistocerca\u00a0gregaria:\u00a0<\/em><a href=\"https:\/\/i5k.nal.usda.gov\/bio_data\/1394322\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/bio_data\/1394322<\/a><\/p>\n\n\n\n<p><em>Schistocerca\u00a0piceifrons:\u00a0<\/em><a href=\"https:\/\/i5k.nal.usda.gov\/bio_data\/1394321\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/bio_data\/1394321<\/a><\/p>\n\n\n\n<p><em>Schistocerca cancellata:<\/em>\u00a0<a href=\"https:\/\/i5k.nal.usda.gov\/bio_data\/1394317\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/bio_data\/1394317<\/a><\/p>\n\n\n\n<p><em>Schistocerca\u00a0americana:<\/em> <a href=\"https:\/\/i5k.nal.usda.gov\/bio_data\/1394307\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/bio_data\/1394307<\/a><\/p>\n\n\n\n<p><em>Schistocerca\u00a0serialis cubense:<\/em>\u00a0<a href=\"https:\/\/i5k.nal.usda.gov\/bio_data\/1394319\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/bio_data\/1394319<\/a><\/p>\n\n\n\n<p><em>Schistocerca\u00a0nitens:\u00a0<\/em><a href=\"https:\/\/i5k.nal.usda.gov\/bio_data\/1394318\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/bio_data\/1394318<\/a><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><strong>3. Hi-C data and contact maps for five <em>Schistocerca<\/em> species are available here, at DNA Zoo:<\/strong><\/p>\n\n\n\n<p><em>Schistocerca piceifrons<\/em>: <a href=\"https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_piceifrons\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_piceifrons<\/a><\/p>\n\n\n\n<p><em>Schistocerca cancellata<\/em>: <a href=\"https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_cancellata\" target=\"_blank\" rel=\"noreferrer noopener\"><u>https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_cancellata<\/u><\/a><\/p>\n\n\n\n<p><em>Schistocerca americana<\/em>: <a href=\"https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_americana\" target=\"_blank\" rel=\"noreferrer noopener\"><u>https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_americana<\/u><\/a><\/p>\n\n\n\n<p><em>Schistocerca serialis cubense<\/em>: <a href=\"https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_serialis_cubense\" target=\"_blank\" rel=\"noreferrer noopener\"><u>https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_serialis_cubense<\/u><\/a><\/p>\n\n\n\n<p><em>Schistocerca nitens<\/em>: <a href=\"https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_nitens\" target=\"_blank\" rel=\"noreferrer noopener\"><u>https:\/\/www.dnazoo.org\/assemblies\/Schistocerca_nitens<\/u><\/a><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><strong>4. JBrowse\/Apollo genome browsers for six <em>Schistocerca<\/em> species are available here:<\/strong><\/p>\n\n\n\n<p><em>Schistocerca gregaria<\/em>:\u00a0<a href=\"https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_gregaria\/jbrowse\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_gregaria\/jbrowse\/<\/a><\/p>\n\n\n\n<p><em>Schistocerca piceifrons<\/em>: <a href=\"https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_piceifrons\/jbrowse\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_piceifrons\/jbrowse\/<\/a><\/p>\n\n\n\n<p><em>Schistocerca cancellata<\/em>:\u00a0<a href=\"https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_cancellata\/jbrowse\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_cancellata\/jbrowse\/<\/a><\/p>\n\n\n\n<p><em>Schistocerca americana<\/em>:\u00a0<a href=\"https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_americana\/jbrowse\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_americana\/jbrowse\/<\/a><\/p>\n\n\n\n<p><em>Schistocerca serialis cubense<\/em>:\u00a0<a href=\"https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_serialis_cubense\/jbrowse\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_serialis_cubense\/jbrowse\/<\/a><\/p>\n\n\n\n<p><em>Schistocerca nitens:\u00a0<\/em><a href=\"https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_nitens\/jbrowse\/\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/apollo.nal.usda.gov\/apollo\/Schistocerca_nitens\/jbrowse\/<\/a><\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><strong>5. Other genomic resources:<\/strong><\/p>\n\n\n\n<p>i5k Workspace@NAL Organsim pages &#8211; you can find them by browsing\u00a0<a href=\"https:\/\/i5k.nal.usda.gov\/organisms\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/organisms<\/a><\/p>\n\n\n\n<p>Blast:\u00a0<a href=\"https:\/\/i5k.nal.usda.gov\/webapp\/blast\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/webapp\/blast<\/a><\/p>\n\n\n\n<p>Data downloads, including functional annotations:\u00a0<a href=\"https:\/\/i5k.nal.usda.gov\/content\/data-downloads\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/content\/data-downloads<\/a><\/p>\n\n\n\n<p>Apollo registration:\u00a0<a href=\"https:\/\/i5k.nal.usda.gov\/web-apollo-registration\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/i5k.nal.usda.gov\/web-apollo-registration<\/a><\/p>\n\n\n\n<p>JBrowse\/Apollo &#8211; you can find them by browsing\u00a0<a href=\"http:\/\/apollo.nal.usda.gov\/apollo\/jbrowse\" target=\"_blank\" rel=\"noreferrer noopener\">http:\/\/apollo.nal.usda.gov\/apollo\/jbrowse<\/a><\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>1. All six Schistocerca genomes have been submitted to NCBI and annotated. These assemblies are available at NCBI: BPRI Schistocerca genome BioProject: https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/772722 Schistocerca gregaria (Desert locust): https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/814718 Schistocerca piceifrons (Central American locust): https:\/\/www.ncbi.nlm.nih.gov\/genome\/109698 Schistocerca cancellata (South American locust): https:\/\/www.ncbi.nlm.nih.gov\/genome\/114655 Schistocerca americana (American bird grasshopper): https:\/\/www.ncbi.nlm.nih.gov\/genome\/109697 Schistocerca serialis cubense (Cuban bird grasshopper): https:\/\/www.ncbi.nlm.nih.gov\/genome\/115782 Schistocerca nitens [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"templates\/template-full-width.php","meta":{"footnotes":""},"class_list":["post-611","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.9 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Genomic Resources - behavioralplasticity.org<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Genomic Resources - behavioralplasticity.org\" \/>\n<meta property=\"og:description\" content=\"1. All six Schistocerca genomes have been submitted to NCBI and annotated. These assemblies are available at NCBI: BPRI Schistocerca genome BioProject: https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/772722 Schistocerca gregaria (Desert locust): https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/814718 Schistocerca piceifrons (Central American locust): https:\/\/www.ncbi.nlm.nih.gov\/genome\/109698 Schistocerca cancellata (South American locust): https:\/\/www.ncbi.nlm.nih.gov\/genome\/114655 Schistocerca americana (American bird grasshopper): https:\/\/www.ncbi.nlm.nih.gov\/genome\/109697 Schistocerca serialis cubense (Cuban bird grasshopper): https:\/\/www.ncbi.nlm.nih.gov\/genome\/115782 Schistocerca nitens [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/\" \/>\n<meta property=\"og:site_name\" content=\"behavioralplasticity.org\" \/>\n<meta property=\"article:modified_time\" content=\"2023-03-01T00:53:48+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@NSF_BPRI\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/\",\"url\":\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/\",\"name\":\"Genomic Resources - behavioralplasticity.org\",\"isPartOf\":{\"@id\":\"https:\/\/behavioralplasticity.org\/#website\"},\"datePublished\":\"2022-11-03T19:20:13+00:00\",\"dateModified\":\"2023-03-01T00:53:48+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/behavioralplasticity.org\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Genomic Resources\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/behavioralplasticity.org\/#website\",\"url\":\"https:\/\/behavioralplasticity.org\/\",\"name\":\"behavioralplasticity.org\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\/\/behavioralplasticity.org\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/behavioralplasticity.org\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\/\/behavioralplasticity.org\/#organization\",\"name\":\"Behavioral Plasticity Research Institute\",\"url\":\"https:\/\/behavioralplasticity.org\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/behavioralplasticity.org\/#\/schema\/logo\/image\/\",\"url\":\"https:\/\/behavioralplasticity.org\/wp-content\/uploads\/2020\/10\/BPRI-LOGO-FINAL.png\",\"contentUrl\":\"https:\/\/behavioralplasticity.org\/wp-content\/uploads\/2020\/10\/BPRI-LOGO-FINAL.png\",\"width\":2212,\"height\":1136,\"caption\":\"Behavioral Plasticity Research Institute\"},\"image\":{\"@id\":\"https:\/\/behavioralplasticity.org\/#\/schema\/logo\/image\/\"},\"sameAs\":[\"https:\/\/x.com\/NSF_BPRI\"]}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Genomic Resources - behavioralplasticity.org","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/","og_locale":"en_US","og_type":"article","og_title":"Genomic Resources - behavioralplasticity.org","og_description":"1. All six Schistocerca genomes have been submitted to NCBI and annotated. These assemblies are available at NCBI: BPRI Schistocerca genome BioProject: https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/772722 Schistocerca gregaria (Desert locust): https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/814718 Schistocerca piceifrons (Central American locust): https:\/\/www.ncbi.nlm.nih.gov\/genome\/109698 Schistocerca cancellata (South American locust): https:\/\/www.ncbi.nlm.nih.gov\/genome\/114655 Schistocerca americana (American bird grasshopper): https:\/\/www.ncbi.nlm.nih.gov\/genome\/109697 Schistocerca serialis cubense (Cuban bird grasshopper): https:\/\/www.ncbi.nlm.nih.gov\/genome\/115782 Schistocerca nitens [&hellip;]","og_url":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/","og_site_name":"behavioralplasticity.org","article_modified_time":"2023-03-01T00:53:48+00:00","twitter_card":"summary_large_image","twitter_site":"@NSF_BPRI","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/","url":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/","name":"Genomic Resources - behavioralplasticity.org","isPartOf":{"@id":"https:\/\/behavioralplasticity.org\/#website"},"datePublished":"2022-11-03T19:20:13+00:00","dateModified":"2023-03-01T00:53:48+00:00","breadcrumb":{"@id":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/behavioralplasticity.org\/index.php\/genomic-resources\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/behavioralplasticity.org\/"},{"@type":"ListItem","position":2,"name":"Genomic Resources"}]},{"@type":"WebSite","@id":"https:\/\/behavioralplasticity.org\/#website","url":"https:\/\/behavioralplasticity.org\/","name":"behavioralplasticity.org","description":"","publisher":{"@id":"https:\/\/behavioralplasticity.org\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/behavioralplasticity.org\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/behavioralplasticity.org\/#organization","name":"Behavioral Plasticity Research Institute","url":"https:\/\/behavioralplasticity.org\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/behavioralplasticity.org\/#\/schema\/logo\/image\/","url":"https:\/\/behavioralplasticity.org\/wp-content\/uploads\/2020\/10\/BPRI-LOGO-FINAL.png","contentUrl":"https:\/\/behavioralplasticity.org\/wp-content\/uploads\/2020\/10\/BPRI-LOGO-FINAL.png","width":2212,"height":1136,"caption":"Behavioral Plasticity Research Institute"},"image":{"@id":"https:\/\/behavioralplasticity.org\/#\/schema\/logo\/image\/"},"sameAs":["https:\/\/x.com\/NSF_BPRI"]}]}},"_links":{"self":[{"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/pages\/611","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/comments?post=611"}],"version-history":[{"count":5,"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/pages\/611\/revisions"}],"predecessor-version":[{"id":655,"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/pages\/611\/revisions\/655"}],"wp:attachment":[{"href":"https:\/\/behavioralplasticity.org\/index.php\/wp-json\/wp\/v2\/media?parent=611"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}