Publications

We are maintaining a Google Scholar page for BPRI products: https://scholar.google.com/citations?hl=en&user=WS_5y3gAAAAJ

We are also maintaining a Zotero Group library for BPRI products. If you like to add your publication to the list. Please add using the following details.  

Group Name: BPRI_products  

Link: https://www.zotero.org/groups/4883608/bpri_products/library 

If you like to become a member of this library, please send an email to Taniya Koswatta (taniya.koswatta@ag.tamu.edu).

  • Traner, M., & Raman, B. (2023). Dynamic walking behavior during odor trail-following in locusts. bioRxiv. https://doi.org/10.1101/2023.02.22.529569
  • Brůna, T., Aryal, R., Dudchenko, O., Sargent, D. J., Mead, D., Buti, M., Cavallini, A., Hytönen, T., Andrés, J., Pham, M., Weisz, D., Mascagni, F., Usai, G., Natali, L., Bassil, N., Fernandez, G. E., Lomsadze, A., Armour, M., Olukolu, B., … Worthington, M. (2022). A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. ‘Hillquist’) (p. 2022.04.28.489789). bioRxiv. https://doi.org/10.1101/2022.04.28.489789 
  • Chandak, R., & Raman, B. (2021). Neural manifolds for odor-driven innate and acquired appetitive preferences (p. 2021.08.05.455310). bioRxiv. https://doi.org/10.1101/2021.08.05.455310 
  • Childers, A. K., Geib, S. M., Sim, S. B., Poelchau, M. F., Coates, B. S., Simmonds, T. J., Scully, E. D., Smith, T. P. L., Childers, C. P., Corpuz, R. L., Hackett, K., & Scheffler, B. (2021). The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research. Insects, 12(7), Article 7. https://doi.org/10.3390/insects12070626 
  • Chung, S. H., Zhang, S., Song, H., Whitham, S. A., & Jander, G. (2022). Maize resistance to insect herbivory is enhanced by silencing expression of genes for jasmonate-isoleucine degradation using sugarcane mosaic virus. Plant Direct, 6(6), e407. https://doi.org/10.1002/pld3.407 
  • Contessoto, V. G., Dudchenko, O., Aiden, E. L., Wolynes, P. G., Onuchic, J. N., & Pierro, M. D. (2022). Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues (p. 2022.02.01.478655). bioRxiv. https://doi.org/10.1101/2022.02.01.478655 
  • Cullen, D. A., Sword, G. A., Rosenthal, G. G., Simpson, S. J., Dekempeneer, E., Hertog, M. L. A. T. M., Nicolaï, B. M., Caes, R., Mannaerts, L., & Vanden Broeck, J. (2022). Sexual repurposing of juvenile aposematism in locusts. Proceedings of the National Academy of Sciences of the U.S.A. 119 (34) e2200759119. https://doi.org/10.1073/pnas.2200759119
  • Dewell, R. B., Zhu, Y., Eisenbrandt, M., Morse, R., & Gabbiani, F. (2022). Contrast-polarity specific mapping optimizes neuronal computation for collision detection (p. 2022.05.10.491323). bioRxiv. https://doi.org/10.1101/2022.05.10.491323 
  • Dierick, H. A., Ben-Shahar, Y., Raman, B., & Gabbiani, F. (2021). Genetic and viral approaches to record or manipulate neurons in insects. Current Opinion in Insect Science, 48, 79–88. https://doi.org/10.1016/j.cois.2021.10.003 
  • Field, M. A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B. D., Skvortsova, K., Edwards, R. J., Keilwagen, J., Cochran, B. J., Manandhar, B., Bustamante, S., Rasmussen, J. A., Melvin, R. G., Chernoff, B., Omer, A., Colaric, Z., Chan, E. K. F., Minoche, A. E., Smith, T. P. L., … Ballard, J. W. O. (2022). The Australian dingo is an early offshoot of modern breed dogs. Science Advances, 8(16), eabm5944. https://doi.org/10.1126/sciadv.abm5944 
  • Foquet, B., Little, D. W., & Song, H. (2022). The time-course of behavioural phase transition in the Central American locust. Journal of Experimental Biology 225 (23): jeb244621. https://doi.org/10.1242/jeb.244621
  • Gabbiani, F., & Midtgaard, J. (2022). Neural Information Processing. In ELS (pp. 1–19). John Wiley & Sons, Ltd. https://doi.org/10.1002/9780470015902.a0029420 
  • Garg, V., Dudchenko, O., Wang, J., Khan, A. W., Gupta, S., Kaur, P., Han, K., Saxena, R. K., Kale, S. M., Pham, M., Yu, J., Chitikineni, A., Zhang, Z., Fan, G., Lui, C., Valluri, V., Meng, F., Bhandari, A., Liu, X., … Varshney, R. K. (2021). Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research. https://doi.org/10.1016/j.jare.2021.10.009 
  • Hoencamp, C., Dudchenko, O., Elbatsh, A. M. O., Brahmachari, S., Raaijmakers, J. A., van Schaik, T., Sedeño Cacciatore, Á., Contessoto, V. G., van Heesbeen, R. G. H. P., van den Broek, B., Mhaskar, A. N., Teunissen, H., St Hilaire, B. G., Weisz, D., Omer, A. D., Pham, M., Colaric, Z., Yang, Z., Rao, S. S. P., … Rowland, B. D. (2021). 3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science, 372(6545), 984–989. https://doi.org/10.1126/science.abe2218 
  • Karawita, A. C., Cheng, Y., Chew, K. Y., Challgula, A., Kraus, R., Mueller, R. C., Tong, M. Z. W., Hulme, K. D., Beielefeldt-Ohmann, H., Steele, L. E., Wu, M., Sng, J., Noye, E., Bruxner, T. J., Au, G. G., Lowther, S., Blommaert, J., Suh, A., McCauley, A. J., … Short, K. R. (2022). The swan genome and transcriptome: Its not all black and white (p. 2022.05.02.490350). bioRxiv. https://doi.org/10.1101/2022.05.02.490350 
  • Liu, S., Cao, W., Niu, Y., Luo, J., Zhao, Y., Hu, Z., & Zong, C. (2021). Single-PanIN-seq unveils that ARID1A deficiency promotes pancreatic tumorigenesis by attenuating KRAS-induced senescence. ELife, 10, e64204. https://doi.org/10.7554/eLife.64204 
  • Lowther, C., Mehrjouy, M. M., Collins, R. L., Bak, M. C., Dudchenko, O., Brand, H., Dong, Z., Rasmussen, M. B., Gu, H., Weisz, D., Nazaryan-Petersen, L., Fjorder, A. S., Mang, Y., Lind-Thomsen, A., Mendez, J. M. M., Calle, X., Chopra, A., Hansen, C., Bugge, M., … Tommerup, N. (2022). Balanced chromosomal rearrangements offer insights into coding and noncoding genomic features associated with developmental disorders (p. 2022.02.15.22270795). medRxiv. https://doi.org/10.1101/2022.02.15.22270795 
  • Niu, Y., Zhu, Q., & Zong, C. (2022). Single-cell Damagenome Profiling by Linear Copying and Splitting based Whole Genome Amplification (LCS-WGA). Bio-Protocol, 12(6), e4357–e4357. 
  • Nizampatnam, S., Zhang, L., Chandak, R., Li, J., & Raman, B. (2022). Invariant odor recognition with ON–OFF neural ensembles. Proceedings of the National Academy of Sciences of the U.S.A., 119(2), e2023340118. https://doi.org/10.1073/pnas.2023340118 
  • Robledo-Ruiz, D. A., Gan, H. M., Kaur, P., Dudchenko, O., Weisz, D., Khan, R., Lieberman Aiden, E., Osipova, E., Hiller, M., Morales, H. E., Magrath, M. J. L., Clarke, R. H., Sunnucks, P., & Pavlova, A. (2022). Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: The helmeted honeyeater. GigaScience, 11, giac025. https://doi.org/10.1093/gigascience/giac025 
  • Traner, M., Chandak, R., & Raman, B. (2021). Recent approaches to study the neural bases of complex insect behavior. Current Opinion in Insect Science, 48, 18–25. https://doi.org/10.1016/j.cois.2021.07.004 
  • Weinburd, J., Landsberg, J., Kravtsova, A., Sharma, T., Simpson, S. J., Sword, G. A., & Buhl, J. J. (2021). AnisotropicInteraction and Motion States of Locusts in a Hopper Band. bioRxiv. https://doi.org/10.1101/2021.10.29.466390
  • Youngblood, J., Cease, A. J., Talal, S., Copa, F., Medina, H., Rojas, J., Trumper, E. V., Angilletta, M., & Harrison, J. F. (n.d.). Climate change expected to improve digestive rate and trigger range expansion in outbreaking locusts. Ecological Monographs. 
  • Zhu, Q., Niu, Y., Gundry, M., & Zong, C. (2021). Single-cell damagenome profiling unveils vulnerable genes and functional pathways in human genome toward DNA damage. Science Advances, 7(27), eabf3329. https://doi.org/10.1126/sciadv.abf3329